4D-QSAR analysis and pharmacophore modeling: propoxy methylphenyl oxasiazole derivatives by electron conformatitional-genetic algorithm method
نویسندگان
چکیده مقاله:
In this 4D-QSAR study, we obtained pharmacophore identification and biological activity prediction for 50 propoxy methylphenyl oxadiazole derivatives by the Electron Conformational Genetic Algorithm approach. In light of the results given in the data obtained from quantum chemical calculations at HF/3-21 G level, the electron conformational matrices of congruity (ECMC) were built by EMRE software. Considering the pharmacophore atoms, a parameter pool was introduced into the field. To find the theoretical biological activity of the molecules used in this study, the non-linear least squares regression method and genetic algorithm were used to determine the best subset of variables affecting bioactivity. As can be understand from our explanations, it should be noted that the results obtained in this study are in good agreement with the experimental data presented in the literature. The model for the training and test sets attained by the optimum 8 parameters gave highly satisfactory results with R2training= 0.872, q2=0.836 and SEtraining=0.059, q2ext1 = 0.787, q2ext2 = 0.786, q2ext3=0.830, ccctr = 0.933, ccctest = 0.896 and cccall = 0.926.
منابع مشابه
A Mathematical Modeling for Plastic Analysis of Planar Frames by Linear Programming and Genetic Algorithm
In this paper, a mathematical modeling is developed for plastic analysis of planar frames. To this end, the researcher tried to design an optimization model in linear format in order to solve large scale samples. The computational result of CPU time requirement is shown for different samples to prove efficiency of this method for large scale models. The fundamental concept of this model is ob...
متن کاملDiscovery of DPP IV Inhibitors by Pharmacophore Modeling and QSAR Analysis followed by in[emsp14]silico Screening
Dipeptidyl peptidase IV (DPP IV) is a multifunctional protein engaged in many physiological processes. It functions as binding protein, receptor, and proteolytic enzyme. It is a serine peptidase belonging to the S9b protein family. DPP IV exists in two forms: a soluble homodimer and ubiquitous type II integral plasma membrane glycoprotein. It has a strong correlation with many diseases such as ...
متن کاملA new approach to pharmacophore mapping and QSAR analysis using
A key problem in QSAR is the selection of appropriate descriptors to form accurate regression equations for the compounds under study. Inductive Logic Programming (ILP) algorithms are a class of machine learning algorithm that have been successfully applied to a number of SAR problems. Unlike other QSAR methods, which use attributes to describe chemical structure, ILP uses relations. This gives...
متن کاملAutoGPA: An Automated 3D-QSAR Method Based on Pharmacophore Alignment and Grid Potential Analysis
3D-QSAR approach has been widely applied and proven to be useful in the case where no reliable crystal structure of the complex between a biologically active molecule and the receptor is available. At the same time, however, it also has highlighted the sensitivity of this approach. The main requirement of the traditional 3D-QSAR method is that molecules should be correctly overlaid in what is a...
متن کاملLQTA-QSAR: A New 4D-QSAR Methodology
A novel 4D-QSAR approach which makes use of the molecular dynamics (MD) trajectories and topology information retrieved from the GROMACS package is presented in this study. This new methodology, named LQTA-QSAR (LQTA, Laboratório de Quimiometria Teórica e Aplicada), has a module (LQTAgrid) that calculates intermolecular interaction energies at each grid point considering probes and all aligned ...
متن کاملPredictive Modeling of Antioxidant Coumarin Derivatives Using Multiple Approaches: Descriptor-Based QSAR, 3D-Pharmacophore Mapping, and HQSAR
The inability of the systemic antioxidants to alleviate the exacerbation of free radical formation from metabolic outputs and environmental pollutants claims an urgent demand for the identification and design of new chemical entities with potent antioxidant activity. In the present work, different QSAR approaches have been utilized for identifying the essential structural attributes imparting a...
متن کاملمنابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ذخیره در منابع من قبلا به منابع من ذحیره شده{@ msg_add @}
عنوان ژورنال
دوره 14 شماره 2
صفحات 149- 164
تاریخ انتشار 2018-02-01
با دنبال کردن یک ژورنال هنگامی که شماره جدید این ژورنال منتشر می شود به شما از طریق ایمیل اطلاع داده می شود.
میزبانی شده توسط پلتفرم ابری doprax.com
copyright © 2015-2023